Proteomics tools at ExPASy proteomics server (SBI, hosted at NCSC)

Molecular Biology Gateway  (Horizon Scientific Press)

Protocols, etc.

Microarray data analysis and visualization system (Chinese Restaurant Cluster, UMich)

Program to cleave DNA with restriction enzymes (NAR 2003, 31:3688)

Nucleosomes Position Prediction  by genomic sequence  (Nature 2006 Aug 17;442:750-2)

Pattern matching tool (DNA or protein, choice of databases)

SeWeR

Sequence analysis using Web Resources (IUBio-Archive)

siRNA design resource listing at Protocol Online

siRNA online design site (NAR 2004 Jul 1;32(Web Server issue):W124-9)

Transcription element search system (UPenn)

Search binding sites in TRANSFAC (CBRC, Tokyo)

Tool for promoter sequence analysis (from the Institute for Transcriptional Informatics)