List of Complexes

Yeast Protein Complexes

Involved in Transcription and/or in the Nucleus

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PIN MIPS

PIN	MIPS
1. TRANSCRIPTION Chromatin association P168 NAP-Z, 3 subunits Chromatin modification ATP-dependent chromatin remodeling P009 ISW1b, 3 subunits P010 ISW2, 4 subunits P012 SWI/SNF, 12 subunits P030 RSC, 18 subunits P165 SWR1, 12 subunits P166 INO80.com, 15 subunits P167 Htz1 coms, 18 subunits P169 SWR-C, 13 subunits P179 RSCa, 16 subunits P182 ISW2/yCHRAC, 4 subunits P265 ISW1a, 2 subunits Histone acetyltransferase P013 NuA4, 13 subunits P014 NuA3, 2 subunits P015 SAGA, 21 subunits P016 ADA, 4 subunits P026 SAS, 3 subunits P048 Elongator, 3 subunits P049 holo-Elongator, 12 subunits P142 picNuA4, 3 subunits P164 SLIK, 17 subunits P207 SALSA, 12 subunits Histone deacetylase P025 Sin3-Rpd3, 6 subunits P258 Rpd3S, 5 subunits P259 Rpd3L, 12 subunits Histone methyltransferase P031 COMPASS, 7 subunits P034 Set1C, 8 subunits P090 Set1p, 7 subunits P144 Set2, 11 subunits Nucleosome reorganizing P021 SPN, 4 subunits Couple transcription to mRNA export P052 TREX, 9 subunits P129 Sac3-Thp, 4 subunits DNA binding P032 SBF, 2 subunits P033 MBF, 2 subunits P037 Mcm1-SFF, 2 subunits P218 HIR, 4 subunits ATP-dependent TBP dissociation from promoter P198 Mot1-TBP, 2 subunits Elongation P049 holo-Elongator, 6 subunits P058 Paf1-RNA polymerase II, 20 subunits P061 Hap, 3 subunits P145 Paf1, 5 subunits Elongator core P048 Elongator, 3 subunits Facilitate elongation through nucleosomes P020 Spt16-Pob3, 2 subunits Holo-elongator P049 holo-Elongator, 6 subunits Link transcription elongation with mitotic recombination P051 THO, 4 subunits RNAPII P144 Set2, 11 subunits Transition from initiation to elongation P154 holo-TFIIH, 10 subunits P155 TFIIK, 3 subunits General transcription factor P018 TFIID, 16 subunits P153 core TFIIH, 6 subunits P155 TFIIK, 3 subunits P264 TFIIF, 3 subunits Mediator P001 Mediator, 24 subunits P022 PolII-Med, 36 subunits P064 Srb4, 8 subunits Mediator core P023 Medc, 13 subunits Initiation P022 PolII-Med, 36 subunits P028 CPF, 16 subunits P058 Paf1-RNA polymerase II, 20 subunits ATP-dependent promoter melting P153 core TFIIH, 6 subunits P154 holo-TFIIH, 10 subunits Preinitiation complex assembly P018 TFIID, 16 subunits Reinitiation P171 PolII-TFIIF, 15 subunits Mediator P001 Mediator, 24 subunits P022 PolII-Med, 36 subunits P063 Med9/10, 6 subunits P064 Srb4, 8 subunits P065 Srb8-11, 4 subunits P156 Srb8/9/10/11, 4 subunits Mediator core P023 Medc, 13 subunits mRNA initiation, elongation, and degradation P035 1.0 Mda CCR4-NOT, 9 subunits Nucleolar silencing P067 RENT, 4 subunits Repression Nucleosome assemply P218 HIR, 4 subunits Reinitiation repressor P136 capping enzyme, 2 subunits RNA polymerase II P062 RNA polymerase II, 12 subunits 2. RNA PROCESSING mRNA cleavage and polyadenylation factor mRNA 3'-end processing P028 CPF, 16 subunits Pre-mRNA processing Cappping enzyme P136 capping enzyme, 2 subunits RNA polyadenylation P206 TRAMP, 3 subunits 3. RNA METABOLISM Cleavage of RNA-DNA hybrids P172 RNAse H2, 3 subunits 4. RNA EXPORT Couple transcription to mRNA export P052 TREX, 9 subunits P129 Sac3-Thp, 4 subunits RNA binding P129 Sac3-Thp, 4 subunits 5. RNA DEGRADATION P035 1.0 Mda CCR4-NOT, 9 subunits 3' to 5' mRNA degradation P209 SKI, 3 subunits Exosome cofactor P206 TRAMP, 3 subunits 6. RIBOSOME BIOGENESIS P076 Yph1-S, 3 subunits P077 Yph1-L, 18 subunits 7. DNA REPLICATION P076 Yph1-S, 3 subunits P077 Yph1-L, 18 subunits Chromatin accessibility P010 ISW2, 4 subunits Telomeric silencing P184 HAT-B, 3 subunits Chromatin accessiblity P182 ISW2/yCHRAC, 4 subunits Chromatin modification ATP-dependent chromatin remodeling P010 ISW2, 4 subunits P012 SWI/SNF, 12 subunits P182 ISW2/yCHRAC, 4 subunits Histone acetyltransferase P184 HAT-B, 3 subunits Nucleosome reorganizing P021 SPN, 4 subunits DNA replisome component P183 Pol epsilon, 4 subunits Inheritance of telomeric silencing P183 Pol epsilon, 4 subunits PCNA clamp loader P056 RF-C, 5 subunits Removal of Okazaki primers P172 RNAse H2, 3 subunits Replication initiation and elongation Pol1 binding P020 Spt16-Pob3, 2 subunits Replisome component Pol epsilon accessory factor P236 GINS, 4 subunits 8. DNA REPAIR P056 RF-C, 5 subunits P183 Pol epsilon, 4 subunits P205 Mms21-Smc5-Smc6, 8 subunits DNA damage repair P166 INO80.com, 15 subunits Excision of misincorporated ribonucleotides P172 RNAse H2, 3 subunits Nucleotide excision P153 core TFIIH, 6 subunits P154 holo-TFIIH, 10 subunits 9. DNA RECOMBINATION Chromatin modification ATP-dependent chromatin remodeling P012 SWI/SNF, 12 subunits DNA damage resistance Structure-specific endonuclease P027 Mms4-Mus81, 2 subunits Mitotic recombination P051 THO, 4 subunits 10. DNA METABOLISM Telomere protection P279 CST, 3 subunits Telomere uncapping and elongation Regulator of telomere uncapping and elongation P221 KEOPS, 6 subunits 11. DNA BINDING Single-stranded DNA binding P279 CST, 3 subunits 12. CELL GROWTH Nutrient signaling Cell size control P242 TORC1, 3 subunits P243 TORC2, 5 subunits 13. CELL CYCLE PROGRESSION Chromatin modification ATP-dependent chromatin remodeling P030 RSC, 18 subunits P179 RSCa, 16 subunits Histone acetyltransferase P235 Rtt109-Vps75, 2 subunits 14. CELL CYCLE Anaphase promoting Ubiquitin ligase P220 APC, 13 subunits	500 Translation complexes 500.10 Cytoplasmic translation initiation 500.10.110 eIF4E/eIF4G/Pab1p complex 500.10.20 eIF2 500.10.40 eIF3 500.40.10 cytoplasmic ribosomal large subunit 500.40.20 cytoplasmic ribosomal small subunit 500.50 Mitochondrial translation complexes 500.60.10 mitochondrial ribosomal large subunit 500.60.20 mitochondrial ribosomal small subunit 510 Transcription complexes/Transcriptosome 510.10 RNA polymerase I 510.100 TFIIH 510.110 TFIIK (CTD kinase) 510.120 RNA polymerase III 510.130 TFIIIA 510.140 TFIIIB 510.150 TFIIIC 510.160 CCAAT-binding factor complex 510.170 mRNA guanylyl transferase (capping complex) 510.180.10.10 NEF1 complex 510.180.10.20 NEF2 complex 510.180.10.30 NEF3 complex 510.180.10.40 NEF4 complex 510.180.20 other DNA repair complexes 510.180.30.10 Ku complex 510.180.30.20 DNA ligase IV 510.180.30.30 MRE11/RAD50/XRS2 complex 510.180.50.10 MSH2/MSH3 complex 510.180.50.20 MSH2/MSH6 complex 510.180.50.30 MLH1/PMS1 complex 510.190.10 ADA complexes 510.190.10.10 ADA complex 510.190.10.20.10 SAGA complex 510.190.10.20.20 SAGA-like complex (SLIK) 510.190.100 OAF complex 510.190.110 CCR4 complex 510.190.120 ARG complex 510.190.130 RTG complex 510.190.140 Tup1/Ssn6 complex 510.190.150 Sin3 complex 510.190.160.10 Cbf1/Met4/Met28 complex 510.190.160.20 Met4/Met28/Met31 complex 510.190.160.30 Met4/Met28/Met32 complex 510.190.180 Mot1 complex 510.190.190 NC2 complex 510.190.20 HPR1 complex 510.190.200 Ume6/Ime1 complex 510.190.210 LEU3 complex 510.190.30 NAC complex 510.190.40 NOT complex 510.190.50 SWI/SNF transcription activator complex 510.190.60 SBF complex 510.190.70 MBF complex 510.190.80 GAL80 complex 510.190.90 GCR complex 510.20 Core Factor (CF) 510.30 Upstream Activation Factor (UAF) complex 510.40 RNA polymerase II holoenzyme 510.40.10 RNA polymerase II 510.40.20 Kornberg's mediator (SRB) complex 510.50 TFIIA 510.60 TFIIB 510.70.10 TBP 510.70.20 TAFIIs 510.80 TFIIE 510.90 TFIIF 520 Translocon 520.30 Signal peptidase 520.40 Signal recognition particle (SRP) 520.50 Signal recognition particle receptor (SR) 400 RSC complex (Remodel the structure of chromatin) 410 Replication complexes 410.10 Post-replication complex (Origin recognition complex=ORC ) 410.20 Replication initiation complex 410.30 Pre-replication complex (pre-RC) 410.33 410.35 Replication complex 410.40.10 PCNA 410.40.100 DNA polymerase epsilon (II) 410.40.110 DNA polymerase zeta 410.40.120 Exonucleases 410.40.130 RNase H1 410.40.140 Topoisomerases 410.40.20 Replication factor A complex 410.40.30 Replication factor C complex 410.40.40 DNA helicases 410.40.50 DNA ligases 410.40.60 DNA polymerase alpha (I) - primase complex 410.40.70 DNA polymerase beta (IV) 410.40.90 DNA polymerase delta (III) 410.50 Telomerase 420 Respiration chain complexes 420.60 other respiration chain complexes 430 Ribonucleoside-diphosphate reductase 440 RNA processing complexes 440.10 Nuclear processing complexes 440.10.10 pre mRNA3'-end processing factor CFI 440.10.20 pre mRNA3'-end processing factor CFII 440.10.30 pre mRNA polyadenylation factor PFI 440.12.10 Exosome complex 440.12.20 RNase MRP 440.12.30 Nop56p/Nop1p complex 440.14.10 RNase P 440.30 Nuclear splicing complexes/Spliceosome 440.30.10 mRNA splicing 440.30.10.10 Prp19p-associated complex 440.30.10.20 Prp9p/Prp11p/Prp21p complex 440.30.20 rRNA splicing 440.30.30 tRNA splicing 440.90 other RNA processing components 445 SCF (Skp1-Cdc53-F-box protein) comlexes 445.10 SCF-CDC4 complex 445.20 SCF-GRR1 complex 445.30 SCF-MET30 complex 450 Serine/threonine phoshpoprotein phosphatase 470 Signal transduction complexes 470.10 SNF1 complex 470.20 STE5-MAPK complex 475 Nuclear cohesion 475.05 Sister chromatid cohesion complex 475.10 Sister chromatid separation complex 480 Spindle pole body (SPB) 480.10 SPB components 480.10.05 gamma-tubulin complex 480.20 SPB associated proteins 490 Synaptonemal complex (SC) 300 Nonsense-mediated mRNA decay pathway complex 310 Nuclear pore complex (NPC) 310.10 NSP1 complex 310.20 NSP1-NUP82 complex 310.30 NSP1-NIC96 complex 310.40 NUP84 complex 320 Nucleosomal protein complex 325 Ornithine carbamoyltransferase 360 Proteasome 360.10 26S proteasome 360.10.10 20S proteasome 360.10.20 19/22S regulator 370 Protein N-acetyltransferase 225 Hexokinase 2 230 Histone acetyltransferase complexes 230.10 HAT B complex 230.20.10 ADA complex 230.20.20 SAGA complex 230.20.40 NuA4 complex 240 Histone deacetylase complexes 240.10 HDA complex 240.20 HDB complex 250 Isocitrate dehydrogenase 260 Intracellular transport complexes 260.100 Aut2p/Aut7p complex 260.30.10 COPI 260.30.20 COPII 260.50.10 t-SNAREs 260.50.20 v-SNAREs 260.60 TRAPP (Transport Protein Particle) complex 260.90 Arp2p/Arp3p complex 270 Kinetochore protein complexes 270.10 Inner Kinetochor Protein Complex 270.10.10 CBF3 protein complex 270.20.10 Ctf19 protein complex 270.20.20 Ctf3 protein complex 270.20.30 Dam1 protein complex 270.20.40 Ndc80 protein complex 270.20.50 Chl4 protein complex 290 Mitochondrial translocase complex 290.10 TOM - transport across the outer membrane 290.20.20 Tim17p-complex 295 Nem1p-Spo7p complex 100 Calcineurin B 110 cAMP-dependent protein kinase 120 Casein kinase 120.10 Casein kinase I 120.20 Casein kinase II 123 Catalase 123.10 Catalase A 125 Cell cycle checkpoint complexes 125.10 DNA damage checkpoint 125.10.10 Ddc1p-Mec3p complex 133 Cyclin-CDK (Cyclin-dependent kinases) complexes 133.10 Cdc28p complexes 133.20 Pho85p complexes 133.30 Kin28p complex 133.40 Srb10p complex 133.50 Ctk1p complex 140 Cytoskeleton 140.20 Actin filaments 140.20.10 Actins 140.20.20 Actin-associated proteins 140.30.10 Tubulins 140.30.20 Tubulin-associated proteins 140.30.30.10 Kinesin-related motorproteins 140.30.30.20 Dynein-complex motorproteins 143 D-arabinose dehydrogenase 177 Gim complexes 180 Prenyltransferases 180.20 Geranylgeranyltransferase I (GGTase I) 180.30 Geranylgeranyltransferase II (GGTase II)

1. TRANSCRIPTION

Chromatin association
P168 NAP-Z, 3 subunits
Chromatin modification
- ATP-dependent chromatin remodeling
    P009  ISW1b, 3 subunits
    P010  ISW2, 4 subunits
    P012  SWI/SNF, 12 subunits
    P030  RSC, 18 subunits
    P165  SWR1, 12 subunits
    P166  INO80.com, 15 subunits
    P167  Htz1 coms, 18 subunits
    P169  SWR-C, 13 subunits
    P179  RSCa, 16 subunits
    P182  ISW2/yCHRAC, 4 subunits
    P265  ISW1a, 2 subunits
- Histone acetyltransferase
    P013  NuA4, 13 subunits
    P014  NuA3, 2 subunits
    P015  SAGA, 21 subunits
    P016  ADA, 4 subunits
    P026  SAS, 3 subunits
    P048  Elongator, 3 subunits
    P049  holo-Elongator, 12 subunits
    P142  picNuA4, 3 subunits
    P164  SLIK, 17 subunits
    P207  SALSA, 12 subunits
- Histone deacetylase
    P025  Sin3-Rpd3, 6 subunits
    P258  Rpd3S, 5 subunits
    P259  Rpd3L, 12 subunits
- Histone methyltransferase
    P031  COMPASS, 7 subunits
    P034  Set1C, 8 subunits
    P090  Set1p, 7 subunits
    P144  Set2, 11 subunits
- Nucleosome reorganizing
  P021 SPN, 4 subunits
Couple transcription to mRNA export
P052 TREX, 9 subunits
P129 Sac3-Thp, 4 subunits
DNA binding
  P032  SBF, 2 subunits
  P033  MBF, 2 subunits
  P037  Mcm1-SFF, 2 subunits
  P218  HIR, 4 subunits
- ATP-dependent TBP dissociation from promoter
  P198 Mot1-TBP, 2 subunits
Elongation
  P049  holo-Elongator, 6 subunits
  P058  Paf1-RNA polymerase II, 20 subunits
  P061  Hap, 3 subunits
  P145  Paf1, 5 subunits
- Elongator core
  P048 Elongator, 3 subunits
- Facilitate elongation through nucleosomes
  P020 Spt16-Pob3, 2 subunits
- Holo-elongator
  P049 holo-Elongator, 6 subunits
- Link transcription elongation with mitotic recombination
  P051 THO, 4 subunits
- RNAPII
  P144 Set2, 11 subunits
- Transition from initiation to elongation
  P154 holo-TFIIH, 10 subunits
  P155 TFIIK, 3 subunits
General transcription factor
  P018  TFIID, 16 subunits
  P153  core TFIIH, 6 subunits
  P155  TFIIK, 3 subunits
  P264  TFIIF, 3 subunits
- Mediator
    P001  Mediator, 24 subunits
    P022  PolII-Med, 36 subunits
    P064  Srb4, 8 subunits
- Mediator core
  P023 Medc, 13 subunits
Initiation
  P022  PolII-Med, 36 subunits
  P028  CPF, 16 subunits
  P058  Paf1-RNA polymerase II, 20 subunits
- ATP-dependent promoter melting
  P153 core TFIIH, 6 subunits
  P154 holo-TFIIH, 10 subunits
- Preinitiation complex assembly
  P018 TFIID, 16 subunits
- Reinitiation
  P171 PolII-TFIIF, 15 subunits
Mediator
  P001  Mediator, 24 subunits
  P022  PolII-Med, 36 subunits
  P063  Med9/10, 6 subunits
  P064  Srb4, 8 subunits
  P065  Srb8-11, 4 subunits
  P156  Srb8/9/10/11, 4 subunits
- Mediator core
  P023 Medc, 13 subunits
mRNA initiation, elongation, and degradation
P035 1.0 Mda CCR4-NOT, 9 subunits
Nucleolar silencing
P067 RENT, 4 subunits
Repression
- Nucleosome assemply
  P218 HIR, 4 subunits
- Reinitiation repressor
  P136 capping enzyme, 2 subunits
RNA polymerase II
P062 RNA polymerase II, 12 subunits

2. RNA PROCESSING

mRNA cleavage and polyadenylation factor
- mRNA 3'-end processing
  P028 CPF, 16 subunits
Pre-mRNA processing
- Cappping enzyme
  P136 capping enzyme, 2 subunits
RNA polyadenylation
P206 TRAMP, 3 subunits

3. RNA METABOLISM

Cleavage of RNA-DNA hybrids
P172 RNAse H2, 3 subunits

4. RNA EXPORT

Couple transcription to mRNA export
P052 TREX, 9 subunits
P129 Sac3-Thp, 4 subunits
RNA binding
P129 Sac3-Thp, 4 subunits

5. RNA DEGRADATION
P035 1.0 Mda CCR4-NOT, 9 subunits

3' to 5' mRNA degradation
P209 SKI, 3 subunits
Exosome cofactor
P206 TRAMP, 3 subunits

6. RIBOSOME BIOGENESIS
  P076  Yph1-S, 3 subunits
  P077  Yph1-L, 18 subunits
7. DNA REPLICATION
  P076  Yph1-S, 3 subunits
  P077  Yph1-L, 18 subunits

Chromatin accessibility
P010 ISW2, 4 subunits
- Telomeric silencing
  P184 HAT-B, 3 subunits
Chromatin accessiblity
P182 ISW2/yCHRAC, 4 subunits
Chromatin modification
- ATP-dependent chromatin remodeling
    P010  ISW2, 4 subunits
    P012  SWI/SNF, 12 subunits
    P182  ISW2/yCHRAC, 4 subunits
- Histone acetyltransferase
  P184 HAT-B, 3 subunits
- Nucleosome reorganizing
  P021 SPN, 4 subunits
DNA replisome component
P183 Pol epsilon, 4 subunits
Inheritance of telomeric silencing
P183 Pol epsilon, 4 subunits
PCNA clamp loader
P056 RF-C, 5 subunits
Removal of Okazaki primers
P172 RNAse H2, 3 subunits
Replication initiation and elongation
- Pol1 binding
  P020 Spt16-Pob3, 2 subunits
Replisome component
- Pol epsilon accessory factor
  P236 GINS, 4 subunits

8. DNA REPAIR
  P056  RF-C, 5 subunits
  P183  Pol epsilon, 4 subunits
  P205  Mms21-Smc5-Smc6, 8 subunits

DNA damage repair
P166 INO80.com, 15 subunits
Excision of misincorporated ribonucleotides
P172 RNAse H2, 3 subunits
Nucleotide excision
P153 core TFIIH, 6 subunits
P154 holo-TFIIH, 10 subunits

9. DNA RECOMBINATION

Chromatin modification
- ATP-dependent chromatin remodeling
  P012 SWI/SNF, 12 subunits
DNA damage resistance
- Structure-specific endonuclease
  P027 Mms4-Mus81, 2 subunits
Mitotic recombination
P051 THO, 4 subunits

10. DNA METABOLISM

Telomere protection
P279 CST, 3 subunits
Telomere uncapping and elongation
- Regulator of telomere uncapping and elongation
  P221 KEOPS, 6 subunits

11. DNA BINDING

Single-stranded DNA binding
P279 CST, 3 subunits

12. CELL GROWTH

Nutrient signaling
- Cell size control
  P242 TORC1, 3 subunits
  P243 TORC2, 5 subunits

13. CELL CYCLE PROGRESSION

Chromatin modification
- ATP-dependent chromatin remodeling
  P030 RSC, 18 subunits
  P179 RSCa, 16 subunits
- Histone acetyltransferase
  P235 Rtt109-Vps75, 2 subunits

14. CELL CYCLE

Anaphase promoting
- Ubiquitin ligase
  P220 APC, 13 subunits

500 Translation complexes
500.10 Cytoplasmic translation initiation
     500.10.110 eIF4E/eIF4G/Pab1p complex
     500.10.20 eIF2
     500.10.40 eIF3
     500.40.10 cytoplasmic ribosomal large subunit
     500.40.20 cytoplasmic ribosomal small subunit
   500.50 Mitochondrial translation complexes
     500.60.10 mitochondrial ribosomal large subunit
     500.60.20 mitochondrial ribosomal small subunit

510 Transcription complexes/Transcriptosome
   510.10 RNA polymerase I
   510.100 TFIIH
   510.110 TFIIK (CTD kinase)
   510.120 RNA polymerase III
   510.130 TFIIIA
   510.140 TFIIIB
   510.150 TFIIIC
   510.160 CCAAT-binding factor complex
   510.170 mRNA guanylyl transferase (capping complex)
       510.180.10.10 NEF1 complex
       510.180.10.20 NEF2 complex
       510.180.10.30 NEF3 complex
       510.180.10.40 NEF4 complex
     510.180.20 other DNA repair complexes
       510.180.30.10 Ku complex
       510.180.30.20 DNA ligase IV
       510.180.30.30 MRE11/RAD50/XRS2 complex
       510.180.50.10 MSH2/MSH3 complex
       510.180.50.20 MSH2/MSH6 complex
       510.180.50.30 MLH1/PMS1 complex
     510.190.10 ADA complexes
       510.190.10.10 ADA complex
         510.190.10.20.10 SAGA complex
         510.190.10.20.20 SAGA-like complex (SLIK)
     510.190.100 OAF complex
     510.190.110 CCR4 complex
     510.190.120 ARG complex
     510.190.130 RTG complex
     510.190.140 Tup1/Ssn6 complex
     510.190.150 Sin3 complex
       510.190.160.10 Cbf1/Met4/Met28 complex
       510.190.160.20 Met4/Met28/Met31 complex
       510.190.160.30 Met4/Met28/Met32 complex
     510.190.180 Mot1 complex
     510.190.190 NC2 complex
     510.190.20 HPR1 complex
     510.190.200 Ume6/Ime1 complex
     510.190.210 LEU3 complex
     510.190.30 NAC complex
     510.190.40 NOT complex
     510.190.50 SWI/SNF transcription activator complex
     510.190.60 SBF complex
     510.190.70 MBF complex
     510.190.80 GAL80 complex
     510.190.90 GCR complex
   510.20 Core Factor (CF)
   510.30 Upstream Activation Factor (UAF) complex
   510.40 RNA polymerase II holoenzyme
     510.40.10 RNA polymerase II
     510.40.20 Kornberg's mediator (SRB) complex
   510.50 TFIIA
   510.60 TFIIB
     510.70.10 TBP
     510.70.20 TAFIIs
   510.80 TFIIE
   510.90 TFIIF

520 Translocon
   520.30 Signal peptidase
   520.40 Signal recognition particle (SRP)
   520.50 Signal recognition particle receptor (SR)

400 RSC complex (Remodel the structure of chromatin)

410 Replication complexes
   410.10 Post-replication complex (Origin recognition complex=ORC )
   410.20 Replication initiation complex
   410.30 Pre-replication complex (pre-RC)
   410.33
   410.35 Replication complex
     410.40.10 PCNA
     410.40.100 DNA polymerase epsilon (II)
     410.40.110 DNA polymerase zeta
     410.40.120 Exonucleases
     410.40.130 RNase H1
     410.40.140 Topoisomerases
     410.40.20 Replication factor A complex
     410.40.30 Replication factor C complex
     410.40.40 DNA helicases
     410.40.50 DNA ligases
     410.40.60 DNA polymerase alpha (I) - primase complex
     410.40.70 DNA polymerase beta (IV)
     410.40.90 DNA polymerase delta (III)
   410.50 Telomerase

420 Respiration chain complexes
   420.60 other respiration chain complexes

430 Ribonucleoside-diphosphate reductase

440 RNA processing complexes
   440.10 Nuclear processing complexes
     440.10.10 pre mRNA3'-end processing factor CFI
     440.10.20 pre mRNA3'-end processing factor CFII
     440.10.30 pre mRNA polyadenylation factor PFI
     440.12.10 Exosome complex
     440.12.20 RNase MRP
     440.12.30 Nop56p/Nop1p complex
     440.14.10 RNase P
   440.30 Nuclear splicing complexes/Spliceosome
     440.30.10 mRNA splicing
       440.30.10.10 Prp19p-associated complex
       440.30.10.20 Prp9p/Prp11p/Prp21p complex
     440.30.20 rRNA splicing
     440.30.30 tRNA splicing
   440.90 other RNA processing components

445 SCF (Skp1-Cdc53-F-box protein) comlexes
   445.10 SCF-CDC4 complex
   445.20 SCF-GRR1 complex
   445.30 SCF-MET30 complex

450 Serine/threonine phoshpoprotein phosphatase

470 Signal transduction complexes
   470.10 SNF1 complex
   470.20 STE5-MAPK complex

475 Nuclear cohesion
   475.05 Sister chromatid cohesion complex
   475.10 Sister chromatid separation complex

480 Spindle pole body (SPB)
   480.10 SPB components
     480.10.05 gamma-tubulin complex
   480.20 SPB associated proteins

490 Synaptonemal complex (SC)

300 Nonsense-mediated mRNA decay pathway complex

310 Nuclear pore complex (NPC)
   310.10 NSP1 complex
   310.20 NSP1-NUP82 complex
   310.30 NSP1-NIC96 complex
   310.40 NUP84 complex

320 Nucleosomal protein complex

325 Ornithine carbamoyltransferase

360 Proteasome
   360.10 26S proteasome
     360.10.10 20S proteasome
     360.10.20 19/22S regulator

370 Protein N-acetyltransferase

225 Hexokinase 2

230 Histone acetyltransferase complexes
   230.10 HAT B complex
     230.20.10 ADA complex
     230.20.20 SAGA complex
     230.20.40 NuA4 complex

240 Histone deacetylase complexes
   240.10 HDA complex
   240.20 HDB complex

250 Isocitrate dehydrogenase

260 Intracellular transport complexes
   260.100 Aut2p/Aut7p complex
     260.30.10 COPI
     260.30.20 COPII
     260.50.10 t-SNAREs
     260.50.20 v-SNAREs
   260.60 TRAPP (Transport Protein Particle) complex
   260.90 Arp2p/Arp3p complex

270 Kinetochore protein complexes
   270.10 Inner Kinetochor Protein Complex
     270.10.10 CBF3 protein complex
     270.20.10 Ctf19 protein complex
     270.20.20 Ctf3 protein complex
     270.20.30 Dam1 protein complex
     270.20.40 Ndc80 protein complex
     270.20.50 Chl4 protein complex

290 Mitochondrial translocase complex
   290.10 TOM - transport across the outer membrane
     290.20.20 Tim17p-complex

295 Nem1p-Spo7p complex

100 Calcineurin B

110 cAMP-dependent protein kinase

120 Casein kinase
   120.10 Casein kinase I
   120.20 Casein kinase II

123 Catalase
   123.10 Catalase A

125 Cell cycle checkpoint complexes
125.10 DNA damage checkpoint
     125.10.10 Ddc1p-Mec3p complex

133 Cyclin-CDK (Cyclin-dependent kinases) complexes
   133.10 Cdc28p complexes
   133.20 Pho85p complexes
   133.30 Kin28p complex
   133.40 Srb10p complex
   133.50 Ctk1p complex

140 Cytoskeleton
140.20 Actin filaments
     140.20.10 Actins
     140.20.20 Actin-associated proteins
     140.30.10 Tubulins
     140.30.20 Tubulin-associated proteins
       140.30.30.10 Kinesin-related motorproteins
       140.30.30.20 Dynein-complex motorproteins

143 D-arabinose dehydrogenase

177 Gim complexes

180 Prenyltransferases
   180.20 Geranylgeranyltransferase I (GGTase I)
   180.30 Geranylgeranyltransferase II (GGTase II)

3 sec